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San Clemente Island and the waters surrounding the island are used and visited by a variety of organizations, including military, civilian government, contractors, environmentalists, civic organizations, fishing vessels, pleasure craft, and others. The following is a partial list of organizations who visit/use SCI. Contact the Webmaster at webster@scisland.org to have your organization included in this list. Click on hyperlinked organizations to jump to their home page.
| California Sea Urchin Commission |
| Explosive Ordnance Disposal Training and Evaluation Unit One |
| Federal Fire Department |
| Fleet Area Control and Surveillance Facility |
| Helicopter Combat Support Squadron 85 (HC-85) |
| NUWC |
| Natural Resources Office |
| Naval Air Station North Island |
| Naval Special Warfare Center (BUDS) |
| Naval Special Warfare Group One (MAR OPS) |
| Rice Cafeteria |
| SOCAL Draft Environmental Impact Statement |
| Sea Urchin Harvesters Association of California |
| Southern California Offshore Range (SCORE) |
| Space and Naval Warfare Command (SPAWAR) |
| The Sea Divers |
Total Organizations: 16